This paper constructs a three-dimensional dynamic model to systematically analyze the matter-energy evolution mechanism of the universe and its coupling relationship with civilization’s autonomous symbiotic development. Starting from the limitations of traditional cosmological hypotheses (e.g., the heat death theory), we integrate time-scale logic and low-probability event transformation rules to explore the feasibility of civilization breaking through evolutionary bottlenecks.The model verifies that the universe’s matter-energy circulation system can support civilization’s autonomous symbiosis via logical derivation, and clarifies the interactive mechanism between cosmic evolution rhythms and civilization’s adaptive strategies. We argue that the autonomous symbiosis of civilization is not only a response to cosmic matter-energy changes, but also a driving force to reshape the local evolution trajectory of the universe.This study provides a new theoretical framework for understanding the co-evolution of the universe and civilization, and lays a foundation for further exploring the practical path of civilization’s long-term survival in the cosmic system.