Authors: Eric Zhuang
Lychee (Litchi chinensis Sonn.) is an economically important tropical fruit threatened by litchi downy blight, caused by the oomycete Peronophythora litchii. To prioritize genes and regulatory features associated with early host responses, we reanalyzed public leaf RNA-seq data from Guiwei and Yurong cultivars (GSE201243; mock and inoculated samples, three biological replicates per group). Differential-expression analysis identified 17 significant DEGs in Guiwei and 117 in Yurong at adjusted P < 0.05, suggesting a broader transcriptional response in Yurong. Eighteen highly responsive genes were selected for structural, motif, promoter, and candidate interaction analyses. These candidates included annotations associated with defense or stress responses, including jacalin-like lectin, pathogenesis-related protein, heat-shock protein, thaumatin/osmotin-like proteins, cytochrome P450, lipid-transfer proteins, and calcium-binding proteins. A selected-gene interaction contrast prioritized LITCHI019519, LITCHI001510, LITCHI028401, LITCHI017676, LITCHI028104, and LITCHI019183 as potential cultivar-dependent response genes. Promoter analysis of 2-kb upstream regions detected stress- and hormone-associated cis-elements, and a random-promoter background test supported enrichment of ARE, MeJA-responsive motifs, TCA-elements, and TC-rich repeats. These results provide testable candidates for future functional validation of lychee resistance to P. litchii.
Comments: 26 Pages.
Download: PDF
[v1] 2025-10-15 00:42:15
[v2] 2026-05-03 15:26:28
Unique-IP document downloads: 179 times
Vixra.org is a pre-print repository rather than a journal. Articles hosted may not yet have been verified by peer-review and should be treated as preliminary. In particular, anything that appears to include financial or legal advice or proposed medical treatments should be treated with due caution. Vixra.org will not be responsible for any consequences of actions that result from any form of use of any documents on this website.
Add your own feedback and questions here:
You are equally welcome to be positive or negative about any paper but please be polite. If you are being critical you must mention at least one specific error, otherwise your comment will be deleted as unhelpful.